Domenico L.Gatti

Structural and Computational Biology

CNN Activations

Top: Human muscle cells decorated for nuclei (blue) and mitochondria (red). Bottom: Same as the top panel, but with superimposed activations from the ReLU layer of a convolutional neural network (CNN) trained to recognize cells treated for Differential Expansion Microscopy (DiExM).

Microscopy Image Processing

This page provides links to:

1. The complete Matlab code for our Microscopy Interactive Image Processing Application (MIIPA)

2. A video tutorial that will guide you through the use of the application

Development of this software is part of a collaborative project with the group led by Prof. Bhanu Jena, Dept. of Physiology, WSU.

Follow the links below to our papers in bioRxiV, which make reference to this software:

1. Pernal, S.P., Liyanaarachchi, A., Gatti, D.L., Formosa, B., Pulvender, R., Kuhn, E.R., Ramos, R., Naik, A.R., George, K., Arslanturk, S., Taatjes, D.J., Jena, B.P. (2019) Differential expansion microscopy.

2. Gatti, D.L., Arslanturk, S., Lal, S., Jena, B.P. (2019) Deep Learning Strategies for Differential Expansion Microscopy.

dgatti@wayne.edu © Domenico Gatti 2021